Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe

I have to tell you, this Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe is hands down one of my favorite holiday treats. I absolutely love how the warm spices in the gingerbread dough perfectly complement the rich, silky dark chocolate ganache in the center. These cookies aren’t just delicious—they’re like a cozy hug in cookie form, perfect for sharing with friends or enjoying alongside a steaming cup of tea on a cold day.

What makes this recipe truly stand out for me is the addition of homemade candied ginger on top. It adds that wonderful zing and chewiness that brings the whole cookie experience to another level. You’ll find that once you try these, they become your go-to when you want a treat that feels special but is vegan-friendly and surprisingly simple to make.

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Why You’ll Love This Recipe

  • Rich Spiced Flavor: The blend of cinnamon, ginger, nutmeg, and cloves make these cookies full of festive warmth and depth.
  • Vegan & Allergy-Friendly: Made without eggs or dairy, featuring oat and almond flours to keep things accessible and tasty.
  • Perfect Texture Contrast: Soft, chewy cookies with a smooth chocolate center and a punch of candied ginger zing.
  • Make-Ahead Friendly: The candied ginger can be prepared in advance, making your cookie baking super stress-free.

Ingredients You’ll Need

This Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe calls for a few simple ingredients that come together beautifully. I find that using oat flour lends a nice earthy flavor and great gluten-free texture, while the almond flour keeps the cookies tender. Tip: stock up on coconut sugar and blackstrap molasses for that perfect sweet-and-spicy balance.

  • Coconut sugar: Adds deep caramel notes unlike regular white sugar.
  • Water: Needed to make the candied ginger syrup.
  • Fresh ginger root: Essential for homemade candied ginger, which amps up the cookie flavor.
  • Oat flour: Makes the dough tender and gluten-free if you choose certified gluten-free oats.
  • Almond flour: Adds a subtle nuttiness and moist texture.
  • Baking powder: Helps the cookies rise slightly for a soft bite.
  • Ground cinnamon, ginger, nutmeg, cloves: The quintessential gingerbread spices that bring warmth.
  • Kosher salt: Balances the sweetness and enhances flavor.
  • Refined coconut oil: Use refined to avoid coconut flavor and keep it neutral.
  • Blackstrap molasses: Key to authentic gingerbread taste and moisture.
  • Dark chocolate (vegan): I love using a good quality simple dark chocolate bar for the ganache.
  • Unsweetened coconut cream: Creates the silky ganache texture without dairy.
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Note: You’ll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Variations

I love making this Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe my own, depending on the occasion. You can easily swap or omit spices and try different chocolate combos to suit your family’s taste buds or any special diet needs.

  • Add orange zest: I sometimes add a teaspoon of fresh orange zest to the dough for a lovely citrus hint that pairs beautifully with the ginger and chocolate.
  • Use different chocolate types: Dark, semi-sweet, or even vegan white chocolate can make fun tweaks to the ganache.
  • Nut-free option: Replace almond flour with extra oat flour or gluten-free flour blend if you’re avoiding nuts.
  • Spice it up: Increase ground ginger or add a pinch of cayenne for a subtle spicy kick that’s always a crowd-pleaser in my house.

How to Make Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe

Step 1: Prepare Your Candied Ginger

Start by simmering your coconut sugar and water until the sugar dissolves and you have a lovely syrup. Then, add your fresh ginger coins and let them gently bubble away for about 30 to 35 minutes. This is where the magic happens: the ginger softens and soaks up that sweet molasses-like syrup. When done, drain the ginger, toss it in extra coconut sugar for a little crisp coating, and pop it in the fridge to cool and dry. I always prepare this a few days ahead because it lets you focus on the cookies later.

Step 2: Mix Your Spiced Cookie Dough

Preheat the oven to 350°F and line your baking sheets with parchment paper. In a large bowl, whisk together all your dry ingredients—oat and almond flours, coconut sugar, spices, baking powder, and salt. Then add the melted coconut oil and blackstrap molasses and combine everything using your hands or a wooden spoon until a moist dough forms. At this stage, the dough should be soft but workable; if it feels too sticky, a little extra oat flour does the trick.

Step 3: Shape and Bake the Cookies

Divide the dough into 14 equal portions and roll each into a ball. Place them evenly on your baking sheets and press your thumb into the center of each ball, creating a nice deep indentation. Don’t worry if the dough cracks a bit—you can just pinch it back together to keep the chocolate well-contained later. Chill these shaped cookies in your freezer for 15 minutes before baking to help them hold their shape. As they bake for about 14 minutes, keep an eye to make sure the thumbprints don’t fill in too much; if they do, gently press them back right away. Once out of the oven, press the centers one last time while warm.

Step 4: Make the Creamy Chocolate Ganache

While the cookies cool, warm the coconut cream gently in a small pan until just simmering around the edges (don’t let it boil). Remove from heat and stir in your chopped dark chocolate until silky smooth. Spoon this luscious ganache into the thumbprint centers, then top each with a piece of your homemade candied ginger for that iconic zing. Let the cookies sit at room temperature or chill briefly until set—either way, the ganache firms up beautifully without losing softness.

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Pro Tips for Making Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe

  • Chill the Dough Before Baking: Freezing the cookies beforehand helps prevent spreading and keeps the indentations intact during baking.
  • Keep an Eye on the Thumbprints: The dough likes to puff up—press gently after 10 minutes in the oven to maintain the perfect well for ganache.
  • Use Refined Coconut Oil: This keeps the cookie flavor neutral, so the spices and chocolate shine through without coconut undertones.
  • Don’t Skip the Candied Ginger: I’ve made these without it, but the contrast of spicy-sweet ginger elevates the cookies and makes people ask for the recipe.

How to Serve Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe

A stack of four round chocolate cookies sits on a white plate with a thin gold rim, placed on a white marbled surface. The top cookie has a bite taken out, showing a soft, dark chocolate center. Each cookie is dark brown with a slightly crumbly texture, and they all have glossy drizzles of chocolate on top. A few crystals of coarse salt are sprinkled over the top cookie, enhancing the look. In the blurry background, more cookies spread out on the same white marbled surface. photo taken with an iphone --ar 4:5 --v 7

Garnishes

For garnishes, I love to sprinkle a tiny pinch of flaky sea salt on the chocolate right after filling the cookies—it adds a perfect balance to the sweet-spicy notes. Sometimes a dusting of powdered sugar or a few finely chopped crystallized ginger bits sprinkled over the top create a pretty finish that’s super inviting.

Side Dishes

These cookies pair wonderfully with a warm chai latte or a creamy mug of vegan hot cocoa. If you’re serving at a party, they’re fantastic alongside a platter of fresh fruit or a simple mixed nuts bowl for added texture and flavor contrasts.

Creative Ways to Present

I’ve gifted these cookies in cute tins layered with festive tissue paper, sometimes adding a sprig of fresh rosemary or a cinnamon stick for a lovely aromatic touch. For holiday gatherings, arranging them on a tiered cookie stand with some fresh cranberries and pine branches really makes the display pop and draws compliments every time.

Make Ahead and Storage

Storing Leftovers

I store leftover Vegan Dark Chocolate-Gingerbread Thumbprint Cookies in an airtight container in the fridge. They keep wonderfully for 2 to 3 days, and honestly, the flavors tend to mellow and deepen, making them even better on day two! Just bring them to room temp before serving so the ganache is nice and soft.

Freezing

These cookies freeze well! I usually bake and cool them fully, then freeze in a single layer on a baking sheet before transferring to a freezer-safe container. When you’re ready, thaw at room temperature for about 20 minutes. The ganache stays creamy and the cookie texture holds up nicely—perfect to enjoy anytime.

Reheating

If you want a freshly baked feel, I pop the thawed cookies into a 300°F oven for about 5 minutes. This warms the cookie just right without melting the ganache too much. You’ll get that just-out-of-the-oven softness and melty chocolate I love.

FAQs

  1. Can I use regular flour instead of oat and almond flour?

    Absolutely! You can substitute with all-purpose flour, but keep in mind the texture and flavor will be slightly different. Oat and almond flours give a tender, slightly nutty crumb, so if you use regular flour, consider adding a tablespoon of almond meal or another nut flour to mimic the almond flavor.

  2. What’s the best way to melt the chocolate ganache?

    The trick is gentle heat. Warm the coconut cream until just simmering — don’t let it boil — then remove from heat before adding the chopped chocolate. Stir until smooth; this prevents seizing and keeps the ganache nice and glossy.

  3. Can I make the candied ginger ahead of time?

    Yes! In fact, I recommend it. Making the candied ginger a few days before baking helps with flavor development and reduces day-of prep time.

  4. How do I keep my cookie thumbprints from filling back in during baking?

    Great question! After about 10 minutes in the oven, gently press the indentations again with a teaspoon. This helps keep that perfect well for your ganache.

Final Thoughts

This Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe has become a staple in my kitchen, especially around the holidays when everyone craves those nostalgic yet refined flavors. I love that these cookies feel indulgent but are made with wholesome ingredients that align with a plant-based lifestyle. If you want to impress your friends or treat yourself to something special and heartfelt, you really can’t go wrong with this recipe. I hope you enjoy making (and eating!) them as much as I do.

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Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe

Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.7 from 64 reviews
  • Author: Emily
  • Prep Time: 30 minutes
  • Cook Time: 50 minutes
  • Total Time: 1 hour 20 minutes
  • Yield: 14 large cookies
  • Category: Dessert
  • Method: Baking
  • Cuisine: American
  • Diet: Vegan

Description

These Vegan Dark Chocolate-Gingerbread Thumbprint Cookies combine the warm spices of gingerbread with rich dark chocolate ganache and homemade candied ginger for a festive, flavorful treat. Perfect for holiday gatherings or a cozy snack, these gluten-free and vegan cookies offer a delightful balance of spicy, sweet, and chocolatey flavors with a soft, chewy texture.


Ingredients

Units Scale

Candied Ginger

  • 1 cup coconut sugar, plus 3 tablespoons
  • 2 cups water
  • 1 3-inch piece of ginger, peeled and sliced into coins about 1/8-inch thick

Cookies & Chocolate Ganache

  • 1 1/2 cups oat flour (180 grams)
  • 1/2 cup super-fine almond flour (68 grams)
  • 1/2 cup coconut sugar (72 grams)
  • 1 teaspoon baking powder (4 grams)
  • 2 teaspoons ground cinnamon (6 grams)
  • 1 tablespoon ground ginger (7 grams)
  • 1/4 teaspoon ground nutmeg (1 gram)
  • 1/4 teaspoon ground cloves (1 gram)
  • 3/4 teaspoon kosher salt (3 grams)
  • 7 tablespoons refined coconut oil, melted (77 grams)
  • 6 tablespoons blackstrap molasses (132 grams)
  • 4.2 ounces Hu Simple Dark Chocolate (2 bars), roughly chopped into shards
  • 3 tablespoons unsweetened coconut cream

Instructions

  1. Make Candied Ginger: Combine 1 cup coconut sugar and 2 cups water in a small saucepan over medium-low heat, stirring until sugar dissolves. Add ginger slices and simmer for 30-35 minutes, stirring occasionally, until syrup thickens. Drain ginger, toss with 3 tablespoons coconut sugar, and refrigerate until cool and dry.
  2. Prepare Oven and Baking Sheets: Preheat the oven to 350°F (175°C). Line two baking sheets with parchment paper.
  3. Mix Dry Ingredients: In a large bowl, whisk together oat flour, almond flour, coconut sugar, baking powder, cinnamon, ground ginger, nutmeg, cloves, and salt.
  4. Form Dough: Add melted coconut oil and molasses to dry ingredients and mix with hands or wooden spoon until a moist dough ball forms.
  5. Shape Cookies: Divide dough into 14 equal portions and roll each into a ball. Place on baking sheets and press thumb into the center of each ball to create a deep indentation without breaking sides. Pinch any cracks closed.
  6. Chill and Bake: Freeze cookie sheets for 15 minutes. Bake cookies for 14 minutes, checking at 10 minutes. If indentations are filling in, press them down gently with a teaspoon. After baking, press centers once more as they cool on trays.
  7. Make Chocolate Ganache: Heat coconut cream in a small saucepan until just simmering. Remove from heat, add chocolate shards, and stir until melted and smooth.
  8. Fill Cookies: Spoon ganache into cookie indentations and top each with one piece of candied ginger. Let set at room temperature or refrigerate for 20 minutes to speed cooling.
  9. Storage: Store cookies covered in the refrigerator for 2 to 3 days.

Notes

  • Candied ginger can be made several days ahead and stored covered in the refrigerator.
  • Use super-fine almond flour for best texture.
  • If indentations fill in too much during baking, gently press them down with a spoon to retain room for the ganache.
  • Refined coconut oil is used here for a neutral flavor; unrefined will add a coconut taste.
  • Store cookies in a covered container in the fridge for up to 3 days for best freshness.

Nutrition

  • Serving Size: 1 cookie
  • Calories: 180 kcal
  • Sugar: 12 g
  • Sodium: 120 mg
  • Fat: 9 g
  • Saturated Fat: 5 g
  • Unsaturated Fat: 3 g
  • Trans Fat: 0 g
  • Carbohydrates: 24 g
  • Fiber: 3 g
  • Protein: 2 g
  • Cholesterol: 0 mg

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